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Channel: Research – College of Agriculture & Natural Resources at the University of Delaware

UD graduate student investigates energy expenditure of ducks

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With waterfowl habitat continually changing and wetland loss occurring on a regular basis, it is imperative for researchers to see if landscapes provide enough habitat to support waterfowl populations at ideal levels.

A habitat’s carrying capacity is the number of living organisms that a region can support without environmental degradation. Researchers at the University of Delaware recently partnered with the United States Geological Survey’s Patuxent Wildlife Research Center (USGS PWRC) and Ducks Unlimited (DU) to piece together a part of the carrying capacity puzzle, looking at how much energy ducks burn during a given day.

The research was led by Jake McPherson, a master’s level student in the Department of Entomology and Wildlife Ecology as well as a regional biologist for Ducks Unlimited, and Chris Williams, professor of wildlife ecology who also oversees a waterfowl and upland game bird research program in UD’s College of Agriculture and Natural Resources.

Supply and demand

McPherson said that there is a question of energy supply — how much energy a habitat is able to provide a certain number of waterfowl — and of energy demand, which is where his research comes into play.

UD graduate student investigates energy expenditure of ducks“On the energy demand side, you need to know how much energy a duck uses in a given day and you can scale that up and, for example, say, ‘One duck uses this many calories a day, and it’s going to be in this region for 60 days and we want to support 100,000 ducks’ so you can come up with a total energetic need for those birds,” said McPherson.

In order to investigate how much energy non-breeding waterfowl use in a day, past waterfowl graduate students under Williams first had to determine what specific activities make up the normal day of a duck. But after that, McPherson has come in to estimate the energy expenditure for some of those behaviors.

“It swims, flies, dives, feeds and each of those activities have different energy requirements. I’m looking at the specific energetic cost of each of those behaviors,” said McPherson.

The study used American black ducks and a lesser scaup in order to represent the two guilds of ducks: divers—ducks who dive for their food—and dabblers—those who dabble for food in shallow water or on the surface.

Using respirometry equipment for the study, McPherson put individual ducks in a sealed chamber. Whenever the duck would perform an action, whether it be swimming or diving, the respirometry machine would read the changes in oxygen and carbon dioxide levels within the chamber.

“As energetic activity increases in the chamber, that bird’s going to be consuming more oxygen than it would be if it was resting,” said McPherson. “We can use the oxygen consumption rate observed inside the chamber during that behavior to come up with an estimate of calories burned per time.”

McPherson said that while the size of the chamber can affect the accuracy of the readings, the researchers were able to develop a pyramid shaped chamber big enough that the ducks could do their normal activities without restriction but also small enough that they could get accurate readings.

In order to determine what the ducks were doing when they observed changes in the amount of oxygen in the chamber, they also videotaped the ducks during two-hour periods and cross referenced the data with the videos.

“We had to videotape these birds and time-synch the video to the respirometry output. I could look at the respirometry output and say, ‘I can see there was an increase in oxygen consumption and therefore energy expenditure in this period, let me go back and see exactly what the bird was doing during that period.’ That’s how we can correlate calories burned to a specific activity,” said McPherson.

One of the biggest challenges they faced in their research is that they were unable to observe what is perhaps the biggest energetic cost for waterfowl: flying.

“You can’t really measure flying in my set up so we said, ‘We’re going to try and get all of these other behaviors and we’ll accept that the energetic cost of flying is beyond the scope of this project,” said McPherson.

Previous study

Currently, when wildlife researchers are determining how many calories waterfowl are burning in a certain habitat, they are using numbers from a study in the 1970’s where researchers surgically implanted heart monitors onto birds in a semi-wild setting and then correlated the heart rate monitor with their observations in the field.

McPherson said that there are couple of challenges with this study, beginning with the surgically invasive implants which could affect the behavior of a wild duck.

“Certainly, it could be said of respirometry as well but surgical implants tend to be more invasive,” said McPherson. “Then, with monitoring heart rate, you can see an increase in heart rate and it wouldn’t be associated with behavior. If a predator flies over, that duck may just be sitting on the water but its heart rate may elevate exponentially and so these are some of the things we were thinking about in terms of the design set up of that previous study.”

McPherson said they are hoping to compare some of these older numbers to the ones they discover.

“Maybe we can confirm them or maybe we’ll find out those numbers were off a bit,” said McPherson.

Williams said that one of the ultimate goals of his lab is to be able to create shortcuts for researchers so that they can estimate carrying capacity without doing costly research in the field.

“It takes a lot of time and money to watch ducks in the field and record their behaviors as well as go out in the field and collect the amount of food that’s on the landscape. If we can get ourselves to a place where we feel like we’ve exhausted the data collection and there are no surprises, we could find shortcuts to make these estimates in the future,” said Williams. “Certainly, that would be a gold standard for us, especially for the state or federal agencies, who could use broad summaries of the data and extrapolate that to where their conservation goals are for the future.”

McPherson, who grew up hunting and fishing in eastern Virginia, said he is looking to determine these carrying capacity estimates in order for future generations to understand and appreciate wildlife.

“My interest in conserving waterfowl populations is to ensure that not only can I continue to enjoy this sport but future generations can enjoy it as well,” said McPherson.

In addition to support from DU and USGS PWRC, the research was also supported by the Black Duck Joint Venture, the Upper Mississippi/Great Lakes Joint Venture and the Waterfowl Research Foundation.

Article by Adam Thomas

Photo courtesy of Jake McPherson

This article can also be viewed on UDaily.


Summer Scholar Amelia Griffith looks for ways to defend key global food source

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Amelia Griffith is a biochemistry major from Elizabethtown, Pennsylvania.

Driven to Discover Summer Scholars at UD image

Q: What are you studying, where and with whom?

Griffith: I am doing research on rice in the College of Agriculture and Natural Resources in the Department of Plant and Soil Sciences, working with Professors Angelia Seyfferth and Nicole Donofrio. The project I am working on looks at two naturally occurring stresses on rice – arsenic uptake and rice blast fungus – and how they interact simultaneously.

Q: What is it about this topic that interests you?

Griffith: I have been interested in plant science research because I have always liked plants and it involves applied biochemistry. I think plants and crops are important in considering the sustainability of people and our planet. With the growing human population, it has become more and more important to develop better ways of feeding people and increasing crop yields. I think it is also important to be able to do this with minimal impact on the earth. This is something I would like to work on in the future.

Q: What is a typical day like?

Griffith: Since I have been working on this project for about a year, I have done many different things, depending on where I was in the project. This summer I have mainly been working on doing quantitative polymerase chain reactions (qPCR) to quantify and compare the expression of particular stress genes to see how the different treatments of arsenic, nutrients, and infection affect the health of the plants. On a typical day this summer, I do a qPCR reaction in the morning and after lunch I wash some dishes in the lab and do some data analysis of my qPCR results.

Q: What is the coolest thing you’ve gotten to do on the project?

Griffith: The coolest thing I’ve gotten to do on this project is probably confocal imaging. Last year I grew rice hydroponically and at different times I took leaf segments from each treatment and drop-inoculated the leaves with the rice blast fungus. The next day after the inoculation, I took the leaves to the Delaware Biotechnology Institute (DBI) to use the confocal microscope there. We were able to take extremely magnified pictures of the leaf segments and see the fungus infection in the cells. Even though it did not work as well as we wanted it to, it was still an interesting process and I got some cool pictures of the rice.

Q: What has surprised you most about your experience?

Griffith: I was most surprised with how much trial and error was involved in research. There are a lot of things that can go wrong and a lot of things don’t work out the way they are expected to. On this project, I have spent a lot of time troubleshooting, particularly with confocal imaging and qPCR. However, a lot of times with the help of others in the labs and with experience, I was able to get better results.

Q: Dreaming big, where do you hope this work could lead?

Griffith: I hope that this research will help me gain lab experience and help me get into graduate school. I am currently looking for master’s programs in plant breeding and genetics. I think I would like to continue research in plant science in the future, perhaps working in industry. I hope to someday help develop a way of making crops and food healthier and more readily available to people worldwide.

Q: If you had to summarize your experience in only one word, what would it be?

Griffith: Stimulating.

Q: What do you enjoy when you are not doing this kind of work?

Griffith: I enjoy Zumba, camping, hiking and spending time with my friends, family and beagle.

Article by Beth Miller
Photo by Kathy F. Atkinson
Video by Jason Hinmon
Published on UDaily on August 24, 2018

What Do Ducks Hear? And Why Do We Care?

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Photo of two baby ducks swimming in water for hearing frequency test.Scientists from the University of Delaware have created a hearing test for ducks. The New York Times put together a video to illustrate what Kate McGrew, a masters student in wildlife ecology at the University of Delaware, was able to find out and why this may up saving the lives of countless ducks.

Why should we care? “This was no frivolous inquiry. Sea ducks, like the ones she trained, dive to catch their prey in oceans around the world and are often caught unintentionally in fish nets and killed.”

Read more about these sea ducks here.

Warrington Farm featured in USDA’s ‘As if You Were There’ virtual demonstration project

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The University of Delaware is working with the United States Department of Agriculture (USDA) on “As if You Were There,” a project highlighting key climate adaptation practices at farm and forest sites within the region.

Through interactive 360 degree photography and videos, users embark on virtual field tours. UD’s Warrington Irrigation Research Farm in Harbeson, Delaware is one of the featured locations in this USDA Northeast Climate Hub virtual demonstration project; studies at Warrington analyze water management, maximizing crop yields and improving profits.

Land grant universities across the northeast region collaborated with the USDA on the “As if You Were There” effort. Jennifer Volk, associate director of UD Cooperative Extension and an environmental quality specialist, serves as UD’s liaison to the Northeast Climate Hub. Volk took on a prominent role on this project as the production lead; she coordinated with researchers and Cooperative Extension personnel at each institution and built many of the virtual stories.

Corn Plants from Underneath at the Warrington Farm in Sussex Delaware“Many of the adaptation practices being investigated by universities in our region are practices that farmers can use right now. They can make their operations more resilient to current temperature and precipitation conditions,” Volk said. “I get the sense that most people think about some far off distant future when we talk about climate change and that seems very unknown and unpredictable. But, our weather stations show temperatures have been increasing; we have recently experienced some pretty extreme rainfall. It is important to share strategies for immediate benefits, which will also put us in a better position to deal with the uncertainties of the future.”

Visitors can see how others in the northeast are adapting to the changes in climate and by sharing adaptation experiences through demonstration, new ideas and techniques.

The project transports viewers directly into what climate resilience planning looks like in real-time.

“The purpose of this project is to harness new technology combined with educational storytelling to engage more people in climate informed decision-making,” said Erin Lane, Coordinator for the USDA Northeast Climate Hub and a leader for this project. “We want to help capture and share the stories of innovative land managers and researchers. The intent is to provide our audience with an interactive experience which will create greater understanding and inspiration. The tours are designed to make you feel ‘as if you were there.’”

Water management research at Warrington

By improving water management, farmers can be more sure that crops receive adequate water throughout the growing season. A more efficient irrigation system can save money, energy and reduce carbon dioxide emissions. Given to the University by Everett Warrington in 1992, the Warrington Farm is equipped with a variable rate center pivot irrigation system, which was upgraded in 2012. In 2016, the irrigation system was upgraded again to reflect the latest advancements in irrigation management and technology.

Now, researchers can use geographic information system (GIS) software to map where and how they want certain research plots irrigated. The primary goal is to evaluate and identify the most effective and efficient water management strategies to enhance crop production and nutrient management.

In addition to the above-ground center pivot irrigation plots, a section of the farm is devoted to subsurface drip irrigation (SDI).

In the Mid-Atlantic region, high heat and droughts are likely to become more common as the climate changes. Irrigation is widely used to protect crop yields during these extreme events. More efficient use of water will help growers maintain or increase their crop yields under changing climate conditions and better protect the environment.

Photo by Jackie Arpie

Previously posted on UDaily on August 25, 2018

Food security under changing climate

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UD part of $3.5 million NSF-funded study to improve key crop resilience

Jeffrey Caplan (left), UD associate professor of plant and soil sciences, and post-doctoral researcher Kun Huang, are part of a $3.5 million NSF grant to understand how pollen develops in plants, such as corn.
Jeffrey Caplan (left), UD associate professor of plant and soil sciences, and post-doctoral researcher Kun Huang, are part of a $3.5 million NSF grant to understand how pollen develops in plants, such as corn.

An interdisciplinary team of researchers from the University of Delaware, the Donald Danforth Plant Science Center and Stanford University have been awarded a four-year, $3.5 million National Science Foundation grant to address concerns about reduced harvests of corn and other cereal grasses.

The project will focus on understanding the small ribonucleic acid (RNA) pathways involved in anther development and crop development when plants are challenged by adverse environmental conditions. Small RNAs are tiny messengers that carry genetic information inside living cells, in this case anthers—the site of pollen development in plants.

According to the Environmental Protection Agency, grains such as wheat, corn and rice grown in the United States account for roughly 25 percent of all grains worldwide. Changes to climate, including the frequency and intensity of extreme weather, are expected to impact crop yields at a time when the planet’s population — and the demand for food — is rising.

The collaborative effort brings together expertise in plant genomics and targeted genetic changes; cutting-edge imaging techniques; and bioinformatics, the science of collecting and analyzing complex biological data, with a focus on developmental biology to meet the demands of producing more nutritious food in climates with higher temperatures.

Jeffrey Caplan, UD associate professor of plant and soil sciences in the College of Agriculture and Natural Resources, is a co-principal investigator on the project, which is led by Blake Meyers, a member of the Donald Danforth Plant Science Center and professor in the University of Missouri’s Division of Plant Sciences. The work is a continuation of a previous NSF study Meyers began while chair of UD’s Department of Plant and Soil Sciences.

Caplan and his collaborators will investigate the life cycle and functions of a class of RNAs that support anther development in grass flowers, which are flowers that are pollinated by wind, eliminating the need for eye-catching petals to attract insects. Anthers are critical in the reproduction of flowering plants because they are the site of pollen development and contain the sperm cells necessary for reproduction. In corn, also known as maize, anthers are located on the whispy tassels found at the top of the cornstalk. Prior research has demonstrated that anther development will often stall or fail under high temperatures, leaving the plants sterile or with reduced fertility, thus decreasing the harvest.

Backstory on corn

Anthers are particularly important to the production of hybrid corn seed. Hybrid corn seed differs from naturally pollinated corn seed in that it is produced by cross-pollinating plants and its use has contributed to increases in agricultural production in the 20th century. Corn is one of the most important crops in global agriculture, in part because of the widespread use of hybrid seeds that have high yields.

Knowledge gained from this research can also be extended to wheat and barley, two important cereal grains.

“A more detailed understanding of the molecular basis of pollen development and male fertility enables improvements in seed production, including hybrid seeds; in the grasses, hybrid corn and rice have significantly boosted world food production,” Meyers said. “Outcomes could include new genetic pathways for more precise control of male fertility and plants with fertility that is more resilient to distressed environments.”

Prior work demonstrated that these small RNAs are required for robust male fertility under even slightly stressful temperature changes. The project focuses on corn anthers because of the ease of staging and dissection, the numerous developmental mutants with cloned genes and the importance of understanding male fertility to the production of hybrid corn seed.

Imaging as a critical component of the work

Caplan’s role in the project will be to determine where these small RNAs are localized within the anther using advanced imaging techniques. Specifically, his team’s work will shed light on where these small RNAs are processed and expressed within each cell, and where they are located within the different tissue layers of the anther over time.

Caplan’s group has developed a method to produce a full 3D rendering of the whole anther, allowing the researchers to visualize the distribution of these small RNAs over the crop’s development.

“Anthers on corn are small in size but they have this beautiful organization that develops as different small RNAs are expressed at various times during the anther’s development,” said Caplan, who also directs the bioimaging center at the Delaware Biotechnology Institute, located near UD’s Newark campus. “Imaging can help visualize and quantify these small RNA developments in relation to other things happening within the cell, and inform understanding of how these small RNAs regulate pollen development.”

The research project will also include training of students in plant and computational biology via continued integration with long-running and successful undergraduate and high school internship programs.

About The Donald Danforth Plant Science Center

Founded in 1998, the Donald Danforth Plant Science Center is a not-for-profit research institute with a mission to improve the human condition through plant science. Research, education and outreach aim to have impact at the nexus of food security and the environment and position the St. Louis region as a world center for plant science. The center’s work is funded through competitive grants from many sources, including the National Institutes of Health, U.S. Department of Energy, National Science Foundation, and the Bill & Melinda Gates Foundation.

Photo illustration by Christian Derr

Jake Bowman reflects on 17 years of deer research at UD

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When Jake Bowman came to the University of Delaware 17 years ago after getting his doctorate from Mississippi State University, he encountered a problem with regards to deer research that he had never experienced before. Not only did some of the people he talked to have no idea about the number of deer in the area, some of them even thought that the animals were endangered.

UD Prof. Jake Bowman learned early that many people in Delaware were unaware of the deer population in the state.“That was kind of like a ‘Wow’ moment for me. I’m at a place where people don’t realize that deer are as abundant as they were in colonial times so it was kind of like, we need to do some things [to raise awareness],” said Bowman, chair for the Department of Entomology and Wildlife Ecology

Read the full article on UDaily.

 

The Art of Scientific Publishing with Harold Drake

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Scientific journals have very high rejection rates — 75 percent or greater. The transformation of a manuscript into a published paper is a major challenge. Learn the logistics of publishing in scientific journals and approaches for minimizing perils from expert editor Harold Drake, Chair of the Department of Ecological Microbiology at the University of Bayreuth in Germany and Editor-in-Chief of the journal Applied and Environmental Microbiology (AEM). AEM has a broad interdisciplinary profile and is the number one cited journal in microbiology and biotechnology. AEM is published by the American Society for Microbiology (ASM) which publishes many journals in various fields of microbiology, including virology, immunology, and clinical microbiology.

These plants bring all the birds to your yard

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Researchers studied the impact of non-native plants on the Carolina chickadee, an ideal representative for bird species in the eastern and southeastern U.S.Popular Science interviewed Professor of Entomology Doug Tallamy and his former Ph.D. student Desiree Narango about their recently published research on non-native plants and population reductions on insectivorous birds. Working with the Smithsonian Migratory Bird Center (SMBC), the researchers investigated the link between non-native plants and birds’ population growth in human-dominated landscapes. This is the first time that the breeding success of a bird has been directly tied to landscape decisions that homeowners make. Tallamy also provides advice what native plants support biodiversity. Read the feature in Popular Science.


Drought fighter found in soil

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Some discoveries happen by accident. Consider how Sept. 28, 1928, unfolded: Alexander Fleming, back in the lab after a vacation with the family, was sorting through dirty Petri dishes that hadn’t been cleaned before he went away. A mold growing on one of the dishes caught his attention — and so began the story of the world’s first antibiotic: penicillin.

Recently, at the University of Delaware, the plants didn’t get watered one long weekend during a small botany experiment. That has now led to an intriguing finding, especially for areas of the globe hit hard by drought — the American West, Europe, Australia, portions of Africa, Southeast Asia and South America, among them.

Climate scientists say we should expect more frequent and severe droughts in the years ahead, while population experts predict about a 30 percent increase in world population, to more than 9 billion by 2050. How will we grow enough food for everyone under such pressures, and do so sustainably? According to this UD research, the answer may lie right under our feet. Read the full article on UDaily.

College of Agriculture and Natural Resources Summer Institute

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Envision Scholars posing at the University of DelawareFor Summer 2019, the University of Delaware College of Agriculture and Natural Resources (CANR) has several internship programs for both UD and non-UD students, including Summer Institute, Cooperative Extension Summer Scholars, and ENVISION. The programs offer excellent laboratory and field research and service-learning opportunities for students. Descriptions of each program are listed below.

Summer Institute

CANR is offering summer research and education experiences to undergraduates (both UD and non-UD students) who are interested in pursuing an advanced degree in the agricultural, natural resources, or life sciences. During the ten-week Summer Institute, students will be paired with CANR researchers on projects that will provide “real-world” experiences in scientific careers. Participants have the opportunity to develop a project, collect and analyze data, and present their results at a campus wide summer symposium.  Participation in the Summer Institute is awarded through a competitive application process and freshmen, sophomores, and juniors are encouraged to apply. The Summer Institute seeks diversity among its participants and thus particularly encourages student applicants who are from groups that are underrepresented in the nation’s scientific or agricultural workforce.  The Summer Institute encourages applicants from other colleges and universities to apply.

The 10-week 2019 Summer Institute will be held on the University of Delaware campus in Newark, Delaware.  Students will each receive a $4,000 stipend for personal and food expenses and can be reimbursed (up to $500) for round-trip travel to participate in the program. Additionally, housing and/or parking permit costs will be covered if students live in University residence halls or need to have a car on campus.

For more information, visit the Summer Institute website or contact Dr. Eric Benson, CANR Summer Institute Faculty Coordinator at ebenson@udel.edu. To apply, visit the application process page.  Applications will be accepted through March 1, 2019.

Cooperative Extension Summer Scholars

The Cooperative Extension Summer Scholar Program is for current University of Delaware undergraduate and graduate students. Selected scholars will be paired with Cooperative Extension personnel to work on a project in line with Cooperative Extension’s mission to connect university knowledge, research, and resources with the public to address youth, family, community and agricultural needs.

During the summer scholar session, students will follow Cooperative Extension’s service learning model, implemented through one of extension’s four program areas: 4-H youth development, family and consumer sciences, lawn and garden, and agriculture and natural resources.  The summer scholar session will take place June 9 to Aug. 14, 2019. Scholars will receive a stipend for their participation.

Interested students are encouraged to apply before the application deadline of Feb. 8, 2019. Applicants will be invited to meet with the selection committee. Selected scholars will be notified of their acceptance into the program prior to spring break.

For information and the application link, visit the Cooperative Extension website or contact Alison Brayfield at alisonb@udel.edu or 302-831-2504.

Unique Strengths Undergraduate Research Internships

Through the generosity of our donors, the CANR Unique Strengths summer undergraduate research internship program will provide support for a 10-week undergraduate research internship experience with a CANR faculty member.  The CANR Unique Strengths encompass five research areas:

  • Genetics and Genomics
  • Mitigation of and adaptation to climate change
  • A “one health” approach to animal, plant, human and ecosystems;
  • Sustainable food systems, landscapes and ecosystems; and
  • The human dimensions of agriculture and natural resources

Eligible undergraduates must be nominated by a CANR faculty member. Once nominated, each nominee will need to provide a brief personal statement articulating how the internship experience with the nominating faculty member will serve their longer-term career goals and interests. Nominees must also provide a transcript (unofficial is ok) and a description of their prior research experiences (if, applicable).

Interns will receive a $4,250 stipend and $750 for laboratory supplies. At the conclusion of their fellowship experience, undergraduate interns are expected to present a poster at the annual summer undergraduate research symposium, typically held on the second Thursday of August. A total of ten undergraduate research internships will be awarded across the five CANR unique strength groups. Nominations will open on Jan. 14, 2019 and will close on Feb. 28, 2019.  Applicants will be notified of acceptance the week of Mar. 18th, 2019.

Eligibility requirements
  • Undergraduate nominees only.
  • Nominee must be advised by a CANR faculty member who has aligned with a CANR Unique Strength group.
  • A CANR faculty member may nominate up to two students.
  • Priority given to students graduating in 2021 or later or students graduating in 2020 who have prior research experience.
  • Priority given to students who have already participated in an undergraduate research experience.

ENVISION

Envision is a three-year undergraduate research experience funded through the USDA National Institute of Food and Agriculture (NIFA) focused on generating the next generation of Agricultural Scientists. As minorities are underrepresented in these disciplines and research target areas, this project was developed to address this disparity.

With partnering institutions (Lincoln University, Delaware State University, and University of Maryland Eastern Shore), at minimum of ten undergraduates will work with project investigators to develop their own hypothesis-based research project, document this using video production training, and present on this work at both public (Delaware State Fair) and scientific (UD Symposium) audiences. The summer includes training in video equipment, editing and storytelling, industry trips, laboratory and safety training, and participation in team-building activities.

Participants will be paired with faculty members in the areas of Animal Health and Disease; Bioenergy and the Environment; Food Microbiology and Safety; Genetics and Genomics; or Physiology, Immunology, and Animal Nutrition based on student interest and faculty availability.

Students from the University of Delaware and the list partner institutions are encouraged to apply.  The ten-week, 2019 ENVISION program will be held on the University of Delaware campus in Newark, Delaware. Students will each received a $4,000 stipend for personal and food expenses and can be provided on campus housing by request.

Contact Dr. Mark Parcells, Animal and Food Sciences Faculty Coordinator at parcells@udel.edu.

To apply, visit the application process page. Applications will be accepted through Mar. 18, 2019.

 





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